#NEXUS BEGIN MacCladeStart; Extended; END; BEGIN DATA; DIMENSIONS NTAX=33 NCHAR=399; [Matrix used in Lee, ODE 2004/2005] FORMAT SYMBOLS= " 0 1 2 3 4 5 6" MISSING=? GAP=- ; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Outgroup 000(01)000000000000000000000000000000000(01)0(01)(01)(01)0000(01)0000000(04)0000000000-0000000000000000000000000000000000000(01)0000000000000(02)000(01)(01)0(02)??000?000000000000(01)00000(01)00000000000-0000000?---000(01)00000000000-0(01)000000000000(01)000000000000000000000000000000000--000?00(02)000000-0-0000000000000000000000000000------000000000000000-00000000000000000000000000--0000000-0000000000000000000000--000000000-000-00000000-0000000?00? Iguanidae 100000(01)00000000101000001000110(12)0000001(01)01(12)000010001100100(01)0000000-000000000000000000(01)0100(01)0000000000000000000(01)1000(01)002(012)(01)0(12)10(012)(01)000(01)0110000(01)(01)10002000(01)00000000000010000(01)0(01)00010110(01)11(01)0000(01)00(01)10(01)(01)(01)0001000000(01)1(01)00(01)0000(01)0(012)(01)00000000100000000000--(01)0(12)0(01)000010(01)0-10(01)00000(01)0(01)0000(01)0(01)00000000101000(01)0000100(01)0010000000-000000101(01)1000(01)10000000010--000(01)0010000000011001011?000002010(01)0012000-2021(12)0000000-0(01)000001101 Leiolepidinae 1000011000(01)00001010000010001102-000001001(12)00001000110010010000000-0000000000000000101010000000000000000100000(01)11000002000-102-0000010000001100020001000100002--0101001-1-0(01)101101-1000000100-01-0000100000001(01)00(01)0000110000000000100000000000--0020(01)00001010-101000???????00?0000000000101000(01)001???010010000000-00000111-????0010000000010--000200100000000110??0100??00020?0(01)0?????????????0001???????000??0? Agaminae 1000011000(01)0100(01)010000010001102-00000100120000100011001001000(01)000-0000000000000000101010000000000000000100000011000002000-10(12)1000001000000110002000(01)000100002--010(01)001-1-00101101-1(01)00000(12)00-01-000010000000100000000111000000000100000000000--(01)020100001000-1010000010(01)000000(01)200000001010000001010010010000000-00000011-00000010000000010--0002001000000001100101000000020?0001111?10201-(13)0000100-00?00001101 Chamaeleonidae 10--010000(01)010010100(01)011(01)0(01)0102-000001(01)(01)2(01)10001000110010210000000-00000000001000000020100----01001000001(01)(01)100111001002000-102--000-0000000(01)10002(01)00(01)00(01)100002--1101001-1-00101101-1110000000-01-000010000001001--1--0(01)-3101000010100010000000--(01)020110001000-0-000000101000020100000000001000000101011-000000000-00000011-01000000000000010--0002001000000001100-0(01)00000012011002-0100-212120000100-00?00001101 Polyglyphanodon 10010000?0000001000001020101?100100001?0110000100012001001000?000-00000?00??000?00?000100????0001000000?010110110??002--?-00110000011??0000?100(12)0000000100002--0100001-1-?0101100113(01)0000000-00000001000000010011001?????00000000100001(01)00000--0?????0?0??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Macrocephalosaurus 10010000110000010100000(01)01010000000001?0(01)20000(01)000120010010001000-00000100000??000001010001010001000000-01012001110002--?000110000010000000110010001000000000000100001-1-?010110011??0000-00-00000001000000?11011001?????00000001100001000000--2?????0????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Xantusiidae 1001000000?00000010001000(01)0(01)010-101-0(01)0(01)0211000110110010010001(01)0100000110100000000(01)0101100101(01)1010000000010(01)(01)1100000012-00101100000110(01)-1-0110000000000000000000100001-1-00101101-(01)(23)00000(01)0(01)1000000010000000100110010(01)01000000111100001000000--(01)010000100110-1110000?1??00(01)000011100000210100100-00100(01)001001020000111200?10100110010010000--0010101000000001(01)00200??000?02001002-0??????????1010??-????120?001 Eublepharinae 00010000001000000100010000010100101-201102001--100(01)10030010001100-00001101000010011010110010100010000000010(01)01100000022-0010100001011000010100020101011000000000100001-1-10110101-0200000000-001000010000001100110010(01)01000000001100001000000--0001000110010-111(01)0????????00?100-001101200010100000?0011210101101111012000????0110000010000--00101010010001010001002?0000010?101002??????????101000-(01)1?(01)020?00? Gekkonines_s.l. 1001000000100000010001000(01)010100101-2111-2001--1000---30010001100-000011010000(01)001101011001010(01)0(01)0000000010101100000022-0010(12)00001011000(01)10100020101011000000000100001-1-10-10001-0(02)00000000-0010000100000011(01)01100100-10000000(01)(01)100001000000--00(01)1000110010-11(01)21000(01)000100(12)100-0111012000101000001001121010110111101200010100110000011000--001010100100010101010(01)20000?0(01)0?(01)01002011101204011100??00?00201011 Diplodactylinae 00010000001000000100000000010100101-2111-2001--1000---30010001100-00001101000000011010110010100010000000010101101000022-00101000010110001-0100020101011000000000100001-1-10-10(01)01-0(02)00000000-0010000100000011001100100-(12)000000011100001000000--0001000110010-11(01)21?000?00?00?100-01120??0?0101000??10011210101101111?12?0??010011000001???0--00101010??0?010101010020000?000?10100201110120401110??????0(01)201001 Pygopodidae 000(01)00000010000001000(01)0000(01)(01)010-101-2011-2001--1000---30010001100-00001101000000010010110010100010000010010(01)01101000022-00(01)01000010110001-010002011101(01)000000000100001-1-10110101-(01)410000000-00100000100001-100101--00-302-0-1(01)1---1-----0000--0001000?10111111(01)?-0001000?0(01)11-0-111201200010011-(01)01-01121010110111101200?10100110000010000--0010101001000101010111??00000000-(01)10020???2121311110?11???0020?-01 Sineoamphisbaena ?0??00001000?00100000001011-010100000011-2000011100---11?100011110(02)?1???000?11??01?0(12)00100101?0?100010000101210?-1?0?2???-00???0?1????000?0???0(12)00?????100002--0110111-1-?0101101-1?00??000????????0100???0?1????0???????0000????????????0000--2?????00???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Dibamidae 100000000010001-0-00010001000{01}(12)-101-2111-00(01)1--1000---302(01)000110110-00012001111001202101101012011001100001-1101-00(01)0002-00002--010-(01)000-1-0100000001011000001000110(12)11-1-10101111-1(45)10(01)12000-101000001110-1---1--1--00-312-0-1(01)0---1-----0000--01--110?0011110-10-1110011121---00??0??011????????00?--0??00000???0?11??00110200100000020??0--?0100?0-0000001?-2012?????0?010?-0??????????????-0?????????011--1? Amphisbaenia 10010000(01)(01)1000(01)101000100010(01)002-001-(02)11100(01)(01)1--1000---3(01)210001111122121120011100(01)1202(01)011010110110001000010122(01)(01)-(01)(01)000(012)10(12)10(12)100(01)00(01)00(01)0(01)00?000(012)(01)011011(01)0000100(01)11(01)221-1-00101111-1(45)10(01)12000-1(01)1-10001110-(012)000(01)1?1--(01)0-30(12)100111---2-----0000--(02)(01)2?1(01)010011100-(01)001110001111-?100?10000210000110-??10-1010200000-001(01)2200010000141100020001100010002-0000?011-201200?00(01)01200-(01)0(02)12110-2120(13)0-0101100?1(01)(01)01--0? Lacertidae 100100100000000(01)0(01)0001000101000-111-01000210000101110010000001000-0000110000000000101010001010001000000001000(01)100000020(01)001000000101100001011012000000000000000010(01)001-(01)00010110001(023)0000(01)(01)0(01)1000000010000000100110010101(01)000000021000010000010020(12)0000100110-1110000000000000012110000021000010001001000100010100001012001101000311000100010020100010000100011001001000000201000101100-102050001011011?10000000 Teiidae 100100100000000101000(01)0000010(01)0(01)100101000(01)0000(01)100110(01)100000000010000011000000000000(12)01000101000100000000101001(01)000002(01)0001000000101100001012012000000000000(01)00010(01)(01)01-(01)00(01)10110011(023)00000101100000001000000(01)110110010101001000102100001000000--(02)0100(01)0100110-11(01)00000100000000022100000210101----21011002100101000011210011010(01)041100010001101110001000101001100100(01)?0000020001001(01)100-202010001011011110000000 Gymnophthalmidae 1000001000(01)0000101000(01)000001000010010101-(12)000001(01)0110010000001(01)0100000110(01)0000000000101000101(01)001000000001000011000002(02)00(01)(01)0(01)(01)000101100001012012000000(01)00000(01)000100001-100010110011(023)00000(12)011000000010000000110110010101001000112100001000000--(02)0(12)01(01)010011(01)011(01)00000?000000?002210??00210101----21?111?210010?????1??????1010004110001000110111000100010100110??00(02)???0?0200010???000-0021(13)000101101???0000?0? Cordylidae 100(01)00000000000(01)010000000(01)010(01)001(01)0101(01)(01)02(01)000011011001001000100100000110000000100(01)0101000101000100000000100011(01)00000100001000000101101001010002001(01)111000000000100001-(01)0001011(01)1-1(23)(01)0000000-000000010000000100(01)(01)00100-(12)(01)000001021000010001120020200(01)010011101110000000(01)000000000100000210100000-?000(01)0001000021-0?101100(01)10100010010000001012010001100010001100100??000?02000?0?????????????0010110(01)1?(01)(01)000?0? Scincidae (01)001000000(01)0000(01)01000(01)000101010(01)1(01)(01)101(01)0020000010111001001000100(01)000001100000(01)0100(01)0(01)(01)1000101(01)(01)0100100000100011(01)000001(012)00010(01)0000101(01)010010100(01)2001111100000(01)000100001-(01)000101101-130000(12)00(01)00(01)000001000000(01)10011(01)010(01)-1(01)00000(01)1210000100011200(02)0(12)0(01)(01)01001111(01)10000(01)00001(01)(12)000000100000210102-0--100001001000021-01101100110100010010000001011010001100010001100100?0000?0200100111(01)(01)(01)0(012)(01)2(01)(12)000101111111(01)000000 Anguidae 100100000000000101(01)00(01)000(01)(01)1010(01)110101100(12)000001(01)0(01)10010(01)1000100(01)1000011(01)0010(01)0(01)001000100010110010000000010(01)011000000(12)001110(01)000010110(01)001010002001101100(01)0010001000010(01)000101101-1(34)(01)0(01)0200(01)00(01)00000(01)00000(01)(01)10011(01)0100-(12)0(012)000(01)1(01)210(01)00100011200(01)0(12)0(01)10100111(01)(01)10000(01)0(01)010(01)(01)000000(01)00010210000(01)(01)(01)-100001010000000-001111000(01)0110020001010000--00100110000000011000001?(01)(01)000200(01)00002??????????001011111?1(01)0(01)000? Xenosaurus 10000000000000010010000000010101110101100210011000110010010001000-0000111001000100001010001011001000000001100110000001001110000001011000010100022001001000001000100001-1000101101-1300002000-0100000100000001001000100-1000000101100001000102102010110100010-0-00000??0?0000?0000100010210000000-10?000000000000-?????????????0020001010000--001000100000000110??011???0?020?0?0?????????????00?0??0????100??0? Shinisaurus 10000000000000010010000000010101110101100100010100110010010001000-0000111001000100101010001011000000000001100110000001001110000001011000010100022001001000001000100001-0000101101-1000002000-0000000100000001001000100-1000000111100001000102102010110100010-0-0000???????00??000100?1??1?????????????????????????????????????00200?10???????0???????????000?10??011?????020????????????????????????????1????0? Heloderma 100100000000000101000000011-010-001-0111-2001--100110110000001100-000011100100010010001000101100110000100101011000000200121011100101110000010002001100101110110010111(01)00000101101-130000(12)000-01-0010100000000001001-00-1000000011100001000102101020010100010-1100000????0000?0100100010210000100-200110000000000-??11?1????0110031001010000--00100110000000011001021?11011200010(01)0(12)??????????001011012110000000 Lanthanotus 101000010101000101001020011-010-101-0111-1001--100110110110001000-0000111011000?01111010001011001000001001010110000002001210121010011200000000020011001011101100101110000?1201101-132010(12)000-01-1010100000001001000100-3000000011100001000102110020110100010-0-00000????0000?010010??102?0000000-20?100?001000??????1??????0111041101011100--002---2-10000001101?011?????12100?0?????????????00?0?1?????0?0??0? Varanus 101000010101000101001-2001010101110111100100000100110110110001100-0000110011000101011010001011001100001000010111000002001210011000011200000000020011001011101100101111-1-02201101-1320102000-01-101010000000110(01)000(01)0(01)-200000000(01)100001000(01)0(02)11(01)000110100010-11000001111000000102100010210000000021010000010(01)000-002220(01)01101110411011112-0--002---2-100000011011021111111211010(01)1(12)1110202010001011012110000000 Aigialosauridae 11??0?01010??1011101?-2010(01)10(01)0?1??101?001?000010011?1?20?111??????00???????????11??????0?????????????????0????????10201?-0102?110?0020100010101002101?21111?1?1???00?????0101100113211?0000-01-101000001100000?000?00-0001110(02)1100011-110000--0?????1????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????2???? Mosasauridae 111000010100010111010-2010000(01)011(01)01011001?0000000111122011111001100001100110001110020100111100011000010010(01)0010100102011-0102?1101002010001010100210112111111110-1001-01?0(01)1110011321110000-01-101000001100(01)00?001-00-000111021(01)00011-110000--0010??2?0??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????2???? Dolichosauridae ????0?0101?????????0???0?00101???0??????0?????????????????????0??????????????????????????1??????????????????????????02111-0??2??01000???000?0??????????200-0111????00?????010110011(345)301?2000-01-?010?000??1-00???1??0????1???1?????111???0000??0??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????2???? Adriosaurus 1???1?010(01)0??0?????????00101?(01)0?10?0?1?0010?0???0010?1??????????11??????????????????2????????????????????????1????0????????????????????0??????0?001101????10???1??1(01)??????01???00?1330????10-01-1011?000111-?????????????111112110111??110000--0??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????2???? Pachyrhachis 10??1000001?0001010??-20011-?00110000111-0011--?0010?123210?0??0111121?1?????00?1???21??11???2?0??1001001100011?10?11201?-2202??0010030-000101001------22110?1?1???000101?00??100?1530102010-01-???1?0011?2---1--1--1---02-0-12110111--111000--01--??2-0??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????2???? Haasiophis 10??10?0001??0?????00??00100?0???0???1?1-0011--?0010112021000?2?111??111???????0????21??1?????001?10010?1??0011?10?11201?-2202?10000030-000?01001-----?2?110???1???000101??????0???63?1???1????????0???21?2---1--1--1---?2-0-12????11??1110?0--01--??2-???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Serpentes 101(01)10000(01)10001---00(01)01001(01)(01)00(02)(01)(01)0(01)0(12)111-0011---00101(01)(23)(12)210(01)0120111121112011(01)(01)0011002110111112001(01)1001(01)011-0011(01)101112011-22(012)21(01)001003(01)-(01)0000(01)00(012)01100122(01)101(01)110-1(012)(012)(01)1(01)10(01)(01)(01)1110116-0(01)(01)2000-01--11000110-2---1--1--1---02---(12)21---(12)-----0000--01--112-00(01)1110-00-1111110(01)(012)1---00010010210000001-20(01)--0000000000-012221001(01)00(01)10411011112-0--002---2-100000001(12)011(02)111(01)121000-102-2000-12213100101111211(01)0(01)0-00 ; END; BEGIN ASSUMPTIONS; USERTYPE 102345 (STEPMATRIX) = 7 0 1 2 3 4 5 6 [0] . 1 1 2 3 4 5 [1] 1 . 2 3 4 5 6 [2] 1 2 . 1 2 3 4 [3] 2 3 1 . 1 2 3 [4] 3 4 2 1 . 1 2 [5] 4 5 3 2 1 . 1 [6] 5 6 4 3 2 1 . ; OPTIONS DEFTYPE=unord PolyTcount=MINSTEPS ; TYPESET * MorphoclineOrdered = unord: 55 63 67-70 83 94 124 134 152-153 157 257 285 299 340 351 354 356 361 380 394-395, ord: 1-54 57-62 64-66 71-82 84-93 95-109 111-123 125-133 135-144 146-151 154-156 158-179 181-222 224-256 258-284 286-298 300-339 341-350 352-353 355 357-360 362-379 381-393 396-399, 102345: 56 110 145 180 223; END; BEGIN SETS; CHARSET ost = 1-248; CHARSET soft = 249-381; CHARSET ecol = 382-399; CHARSET burrowing1 = 180-181 197-200 203 207 210 213 216 218 222 228; CHARSET burrowing2 = 11 15 30-31 35 37 42 45 51 55 57 78 86 89 125 137 144 164-165 176 241; CHARPARTITION OSTvSOFT = ost:1-248, soft:249-381; CHARPARTITION OSTvECOL = ost:1-248, ecol:382-399; CHARPARTITION 3way = ost:1-248, soft:249-381, ecol:382-399; CHARPARTITION SOFTvECOL = soft:249-381, ecol:382-399; END;