Senckenberg am Meer Wilhelmshaven

Marine Botany

Cover                Journal of Eukaryotic Microbiology                      Cover

Peer-reviewed publications  

2016

VERMA, A., HOPPENRATH, M., HARWOOD, T., BRETT, S., RHODES, L. & MURRAY S.A.(2016) Molecular phylogeny, morphology and toxigenicity of Ostreopsis cf. siamensis (Dinophyceae) from temperate south-east Australia. Phycological Research : in press.

HOPPENRATH, M. (2016): Dinoflagellate taxonomy - a review and proposal of a revised classification. Marine Biodiversity : DOI 10.1007/s12526-016-0471-8

2015

SELINA, M., CHOMÉRAT, N. & HOPPENRATH, M. (2015): Morphology and spatial distribution of Cabra species (Dinophyceae, Peridiniales) from Peter the Great Bay (northwestern Sea of Japan), including the description of C. levis sp. nov. European Journal of Phycology 50: 80-91.

2014

WISSHAK, M., ALEXANDRAKIS, E. & HOPPENRATH, M. (2014): The diatom attachment scar Ophthalmichnus lyolithon igen. et isp. n. Ichnos 21: 111-118.

KOHLI, G.S., NEILAN, B.A., BROWN, M.V., HOPPENRATH, M.  & MURRAY S.A. (2014): Cob gene pyrosequencing enables characterisation of benthic dinoflagellate diversity and biogeography. Environmental Microbiology 16: 467-485.

MURRAY S.A., HOPPENRATH, M., ORR, R.J., BOLCH, C., JOHN, U., DIWAN, R., YAUWENAS, R., HARWOOD, T., DE SALAS, M., NEILAN, B.A. & HALLEGRAEFF, G. (2014): Alexandrium diversaporum nov. sp., a new non-saxitoxin producing species: phylogeny, morphology and sxtA genes. Harmful Algae 31: 54-65.

2013

HOPPENRATH, M., CHOMÉRAT, N., HORIGUCHI, T., SCHWEIKERT, M., NAGAHAMA, Y. & MURRAY S. (2013): Taxonomy and phylogeny of the benthic Prorocentrum species (Dinophyceae) - a proposal and review. Harmful Algae 27: 1-28.

TILLMANN, U. & HOPPENRATH, M. (2013): The life-cycle of the heterotrophic dinoflagellate Polykrikos kofoidii. J. Phycol. 49: 298-317.

SELINA, M. & HOPPENRATH, M. (2013): Morphology and taxonomy of seven marine sand-dwelling Amphidiniopsis species (Peridiniales, Dinophyceae), including two new species A. konovalovae sp. nov. and A. striata sp. nov from the Sea of Japan, Russia. Marine Biodiversity 43: 87-104.

HOPPENRATH, M., CHOMÉRAT, N. & LEANDER, B.S. (2013): Molecular phylogeny of Sinophysis: Evaluating the possible early evolutionary history of dinophysoid dinoflagellates. In: Lewis, J.M., Marret, F. & Bradley, L. (eds.) Biological and Geological Perspectives of Dinoflagellates. The Micropalaeontological Society, Special publications. Geological Society, London: 207-214.

2012

ADL, S.M, SIMPSON, A.G.B., LANE, C.E., LUKES, J., BASS, D., BOWSER, S.S., BROWN, M.W., BURKI, F., DUNTHORN, M., HAMPL, V., HEISS, A., HOPPENRATH, M., LARA, E., GALL, L.L., LYNN, D.H., MCMANUS, H.,MITCHELL, E.A.D., MOZLEY-STANRIDGE, S.E., PARFREY, L.W., PAWLOWSKI, J., RUECKERT, S., SHADWICK, L., SCHOCH, C.L., SMIRNOV, A. & SPIEGEL, F.W. (2012): The revised classification of eukaryotes. The Journal of Eukaryotic Microbiology 59: 429-493.

MURRAY, S.A., GARBY, T., HOPPENRATH, M. & NEILAN, B.A. (2012): Genetic diversity, morphological uniformity and polyketide production in dinoflagellates (Amphidinium, Dinoflagellata). PLoS ONE 7(6): e38253.

RÖDER, K., HANTZSCHE, F.M., GEBÜHR, C., MIENE, C., HELBIG, T., KROCK, B., HOPPENRATH, M., LUCKAS, B. & GERDTS, G. (2012): Effects of salinity, temperature and nutrients on growth, cellular characteristics and yessetoxin production of Protoceratium reticulatum. Harmful Algae 15: 59-70.

HOPPENRATH, M., MURRAY, S., SPARMANN, S. & LEANDER, B.S. (2012): Morphology and molecular phylogeny of Ankistrodinium gen. nov. (Dinophyceae), a new genus of marine sand-dwelling dinoflagellates formerly classified within Amphidinium. J. Phycol. 48: 1143-1152. 

SABUROVA, M., CHOMÉRAT, N. & HOPPENRATH, M. (2012): Morphology and SSU rDNA phylogeny of Durinskia agilis (Kofoid & Swezy) comb. nov. (Peridiniales, Dinophyceae), a thecate, marine, sand-dwelling dinoflagellate formerly classified within Gymnodinium. Phycologia 51: 287-302.

HOPPENRATH, M., SELINA, M., YAMAGUCHI, A. & LEANDER, B.S. (2012): Morphology and molecular phylogeny of Amphidiniopsis rotundata sp. nov. (Peridiniales, Dinophyceae), a new benthic marine dinoflagellate. Phycologia 51: 157-167.

2011

YAMAGUCHI, A., HOPPENRATH, M., POSPELOVA, V., HORIGUCHI, T. & LEANDER, B.S. (2011): Molecular phylogeny of the marine sand-dwelling dinoflagellate Herdmania litoralis and an emended description of the closely related planktonic genus Archaeperidinium Jörgensen. Europ. J. Phycol. 46: 98-112. 

2010

HOPPENRATH, M. & LEANDER, B.S. (2010): Dinoflagellates phylogeny as inferred from heat shock protein 90 and ribosomal gene sequences. PLoS ONE 5, e13220 (12 pages).

STERN, R., HORAK, A., ANDREW, R., COFFROTH, M.-A., ANDERSEN, R., KÜPPER, F., JAMESON, I., HOPPENRATH, M., VÉRON, B., KASAI, F., BRAND, J., JAMES, E., KEELING, P.J. (2010): Environmental barcoding reveals massive dinoflagellate diversity in marine environments. PLoS ONE 5, e13991 (14 pages).

GARCÈS, E. & HOPPENRATH, M. (2010): Ultrastructure of the intracellular parasite Parvilucifera sinerae (Alveolata, Myzozoa) infecting the marine toxic planktonic dinoflagellate Alexandrium minutum (Dinophyceae). Harmful Algae 10: 64-70.

CHANTANGSI, C., HOPPENRATH, M. & LEANDER, B.S. (2010): Evolutionary relationships among marine cercozoans as inferred from combined SSU and LSU rDNA sequences and polyubiquitin insertions. Mol. Phylo. Evol. 57, 518-527.

BREGLIA, S.A., YUBUKI, N., HOPPENRATH, M. & LEANDER, B.S. (2010): Ultrastructure and molecular phylogenetic position of a novel euglenozoan with extrusive episymbiotic bacteria: Bihospites bacati n. gen. et sp. (Symbiontida). BMC Microbiology 10: 145 (21 pages).

HOPPENRATH, M., YUBUKI, N., BACHVAROFF, T.R., & LEANDER, B.S. (2010): Re-classification of Pheoploykrikos hartmannii as Polykrikos (Dinophyceae) based partly on the ultrastructure of complex extrusomes. Europ. J. Protistol. 46: 29-37.

2009

HOPPENRATH, M., BACHVAROFF, T.R., HANDY, S.M., DELWICHE, C.F. & LEANDER, B.S. (
2009): Molecular phylogeny of ocelloid-bearing dinoflagellates (Warnowiaceae) as inferred from SSU and LSU rDNA sequences. BMC Evolutionary Biology 9: 116 (15pages).

HOPPENRATH, M. & LEANDER, B.S. (2009): Molecular phylogeny of Parvilucifera prorocentri (Alveolata, Myzozoa): insights into Perkinsid character evolution. J. Eukaryot. Microbiol. 56: 251-256.

HOPPENRATH, M., KOEMAN R.P.T. & LEANDER, B.S. (2009). Morphology and taxonomy of a new marine sand-dwelling Amphidiniopsis species (Dinophyceae, Peridiniales), A. aculeata sp. nov., from Cap Feret, France. Mar. Biodiv. 39: 1-7.


2008

SPARMANN, S.F., LEANDER, B.S. & HOPPENRATH, M.
(2008): Comparative morphology and molecular phylogeny of taxa of the new marine benthic dinoflagellate genus Apicoporus, classified formerly within Amphidinium sensu lato. Protist 159: 383-399.

YAMAGUCHI, H., HOPPENRATH, M., TAKISHITA, K. & HORIGUCHI, T. (2008): Haramonas pauciplastida sp. nov. (Raphidophyceae, Heterokontophyta) and phylogenetic analyse of Haramonas species using small subunit ribosomal RNA gene sequences. Phycol. Res. 56: 127-138.

HOPPENRATH, M. & LEANDER, B.S. (2008):  Morphology and molecular phylogeny of a new marine sand-dwelling Prorocentrum species, P. tsawwassenense sp. nov. (Dinophyceae, Prorocentrales) from British Columbia, Canada. J. Phycol. 44: 451-466.

SELINA, M. & HOPPENRATH, M.   (2008): An emended description of Amphidiniopsis arenaria Hoppenrath 2000, based on material from the Sea of Japan. Europ. J. Protistol. 44: 71-79.

LEANDER, B.S.  & HOPPENRATH, M.   (2008): Ultrastructure of a novel tube-forming, intracellular parasite of dinoflagellates: Parvilucifera prorocentri sp. nov. (Alveolata, Myzozoa). Europ. J. Protistol. 44: 55-70.

TAYLOR, F.J.R., HOPPENRATH, M. & SALDARRIAGA, J.F. (2008): Dinoflagellate diversity and distribution. Biodiv. Conserv. 17: 407-418.

2007

OKOLODKOV, Y.B., CAMPOS-BAUTISTA, G., Gárate-Lizárraga, I., González- González, J.A.G., Hoppenrath, M. & Arenas, V. (2007): Seasonal changes of benthic and epiphytic dinoflagellates in the Veracruz reef zone, Gulf of Mexico. Aquat. Microb. Ecol. 47: 223-237.   

HOPPENRATH, M.., Beszteri, B., Drebes, G., Halliger, H., Janisch, S., van Beusekom, J.E.E. & Wiltshire, K.H. (2007): Thalassiosira species (Bacillariophyceae, Thalassiosirales) in the waters around the islands of Helgoland (German Bight) and Sylt (Northfrisian Wadden Sea) – a first approach to assessing diversity. Europ. J. Phycol. 42: 271-288.

HOPPENRATH, M., M. Elbrächter, Halliger, H., Koeman, R.P.T., Krakhmalnyy, A., Surek, B., Erler, K. & Lucas, B. (2007): First rec ords of the benthic, bloom-forming, non-toxic dinoflagellate Thecadinium yashimaense (Dinophyceae) in Europe – with special emphasis on the invasion in the North Sea. Helgol. Mar. Res. 61: 157-165.

HOPPENRATH, M., Horiguchi, T., Miyoshi, Y., Selina, M., Taylor, F.J.R. & Leander, B.S. (2007): Taxonomy, phylogeny, biogeography, ecology of Sabulodinium undulatum, including an amended description of the species. Phycol. Res. 55: 159-175.

HOPPENRATH, M. & Leander, B.S. (2007): Morphology and phylogeny of the pseudocolonial dinoflagellates Polykrikos lebourae and Polykrikos herdmanae n. sp. Protist 158: 209-227.

HOPPENRATH, M. & Leander, B.S. (2007): Character evolution in polykrikoid dinoflagellates. J. Phycol. 43: 366-377.

2006

HOPPENRATH, M. & Leander, B.S. (2006): Dinoflagellate, euglenoid or cercomonad? The ultrastructure and molecular phylogenetic position of Protaspis grandis n. sp.  J. Eukaryot. Microbiol. 53: 327-242.

HOPPENRATH, M. & Leander, B.S. (2006): Ebriid phylogeny and the expansion of the 'Cercozoa'. Protist 157: 279-290.

Murray, S., HOPPENRATH, M., Preisfeld, A., Larsen, J., Yoshimatsu, S., Toriumi, S. & Patterson, D.J. 
(2006): Phylogenetics of Rhinodinium broomeense gen. et sp. nov., a peridinoid, sand-dwelling dinoflagellate (Dinophyceae). J. Phycol. 42: 934-942.

HOPPENRATH, M. & Selina, M. (2006): Pseudothecadinium campbellii gen. nov. et sp. nov. (Dinophyceae), a phototrophic, thecate, marine planktonic species found in the Sea of Okhotsk, Russia. Phycologia 45: 260-269.

Murray, s., HOPPENRATH, M., Larsen, J. & Patterson, D.J. (2006): Bysmatrum teres sp. nov., a new sand-dwelling dinoflagellate from north-western Australia. Phycologia 45: 161-167.

Houpt, P. & Hoppenrath, M.
(2006): First record of the marine, benthic dinoflagellate Spiniferodinium galeiforme (Dinophyceae) from a temperate region. Phycologia 45: 10-12.  

2005

HOPPENRATH, M., Bolch, C.J.S., Yoshimatsu, S., Saldarriaga, J.F., Schweikert, M., Campbell, C.N., Toriumi, S., Dodge, J.D., Elbrächter, M. & Taylor, F.J.R. (2005): Nomenclatural note on a Thecadinium species (Dinophyceae, Gonyaulacales), which was described as new independently three times within two months. J. Phycol. 41: 1284-1286.

2004

Selina, M. & HOPPENRATH, M. (2004):  Morphology of Sinophysis minimum sp. nov., and three Sinophysis species (Dinophyceae, Dinophysiales) from the Sea of Japan. Phycol. Res. 52: 149-159.

HOPPENRATH, M. (2004): A revised check-list of planktonic diatoms and dinoflagellates from Helgoland (North Sea, German Bight). Helgol. Mar. Res. 58:243-251.   

HOPPENRATH, M., Saldarriaga, J.F., Schweikert, M., Elbrächter, M. & Taylor, F.J.R. (2004): Description of Thecadinium mucosum sp. nov. (Dinophyceae), a new sand-dwelling, marine dinoflagellate, and an emended description of Thecadinium inclinatum Balech. J. Phycol. 40:946-961.

2003

HOPPENRATH, M., Schweikert, M. & Elbrächter, M. 
(2003): Morphological reinvestigation and characterisation of the marine, sand-dwelling dinoflagellate Adenoides eludens (Dinophyceae). Europ. J. Phycol. 38: 385-394.

Horiguchi, T. & HOPPENRATH, M. (2003): Haramonas viridis sp. nov. (Raphidophyceae, Heterokontophyta), a new sand-dwelling raphidophyte from cold temperate waters. Phycol. Res. 51: 61-67.

2000

HOPPENRATH, M. 
(2000): Morphology and taxonomy of six marine sand-dwelling Amphidiniopsis species (Dinophyceae, Peridiniales), four of them new, from the German Bight, North Sea. Phycologia 39: 482-497.

HOPPENRATH, M. (2000): An emended description of Herdmania litoralis Dodge (Dinophyceae) including the plate formula. Nova Hedwigia 71: 481-489.

HOPPENRATH, M. (2000): Morphology and taxonomy of the marine sand-dwelling genus Thecadinium (Dinophyceae), with the description of two new species from the North German Wadden Sea. Phycologia 39: 96-108.

HOPPENRATH, M. (2000): A new marine sand-dwelling Prorocentrum species, P. clipeus sp. nov. (Dinophyceae, Prorocentrales) from Helgoland, German Bight, North Sea. Europ. J. Protistol. 36: 29-33.

HOPPENRATH, M. (2000): Morphology and taxonomy of Sinophysis (Dinophyceae, Dinophysiales) including two new marine sand-dwelling species from the North German Wadden Sea. Europ. J. Phycol. 35: 153-162.

HOPPENRATH, M. & Okolodkov, Y.B . (2000): Amphidinium glabrum sp. nov. (Dinophyceae) from the North German Waddense and European Arctic sea ice: morphology, distribution and ecology. Europ. J. Phycol. 35: 61-67.

1998

HOPPENRATH, M. & Elbrächter, M. 
(1998): Roscoffia capitata (Dinophyceae) refound: notes on morphology and biology. Phycologia 37 (6): 450-457.

Robinson, D.G., HOPPENRATH, M., Oberbeck, K., Luykx, P. & Ratajczak, R. (1998): Localization of Pyrophosphatase and V-ATPase in Chlamydomonas reinhardtii. Bot. Acta 111: 108-122.

1997
 
Luykx, P., HOPPENRATH, M. & Robinson, D.G. 
(1997): Osmoregulatory mutants that affect the function of the contractile vacuole in Chlamydomonas reinhardtii. Protoplasma 200: 99-111.

Luykx, P., HOPPENRATH, M. & Robinson, D.G. (1997): Structure and behavior of contractile vacuoles in Chlamydomonas reinhardtii. Protoplasma 198: 73-84.

 

not peer-reviewed publications (e.g. presentation abstracts)

2011
OTTE, V., WESCHE, K., ZIZKA, G., DRESSLER, S., HOPPENRATH, M. & KIENAST, F.
(2011) The new Herbarium Senckenbergianum: old institutions under a new common roof. TAXON

2001
HOPPENRATH, M. (2001): Biodiversity of marine sand-dwelling flagellates from the North German Wadden Sea., Phycologia 40 (4), Supplement, 114.

HOPPENRATH, M., Drebes, G., Elbrächter, M., Scharek, R., Beusekom, J. van & Wiltshire, K. (2001): The Helgoland and Sylt Marine Phytoplankton Time-Series (AWI)., Phycologia 40 (4), Supplement, 105.

1998
HOPPENRATH, M.
(1998): Sand-dwelling dinoflagellates of the Wadden Sea (List/Sylt), with special emphasis on Roscoffia capitata., NTNU Vitensk. mus. Rapp. bot. Ser. 1998-I; 69-70.

others


HOPPENRATH, M.
(2011) Aufbau einer Dinoflagellaten-Sammlung - Mikrometerkleine Lebewesen kommen bei Senckenberg groß raus. SENCKENBERG nfm 141(3/4): 118-121. 

DRESSLER, S., GEBAUER, P., HOPPENRATH, M., KIENAST, F., OTTE, V. & ZIZKA, G. (2011) Das neue Herbarium Senckenbergianum - Alte Institutionen unter einem gemeinsamen neuen Dach. SENCKENBERG nfm 141(3/4): 110-113.

HOPPENRATH, M. (2004): Im Sand brodelt das Leben. Die Geißeltierchen. In: Watt’n Leben! Tiere und Pflanzen der Nordseeküste vorgestellt von der Wattenmeerstation Sylt. AWI.

HOPPENRATH, M. (2004): Ein leuchtendes Meerestier. Der Dinoflagellat Noctiluca scintillans. In: Watt’n Leben! Tiere und Pflanzen der Nordseeküste vorgestellt von der Wattenmeerstation Sylt. AWI.