Evolution in the Anthropocene: How nature adapts to global change
Welcome! At the intersection of evolutionary genomics, ecology and ecotoxicology, our research group investigates how wild populations respond to rapid environmental change. We are living in an era of profound upheaval. Climate change, chemical pollution and habitat loss are placing nature under immense pressure. Yet evolution does not stand still. Using state-of-the-art genomic methods – that is, the sequencing and analysis of the entire genome – we investigate the mechanisms that enable wild populations to respond to these human-induced stressors. Our focus ranges from short-term physiological responses to long-term genetic adaptations.
Climate change: The race against global warming and drought
How do native ecosystems respond to increasing heat and drought? We are investigating this, amongst other things, in key forest tree species such as the European beech (Fagus sylvatica). By combining population genomic data with environmental modelling and satellite observations (remote sensing), we identify genetic variants that help trees survive extreme periods of drought. This knowledge is crucial for making our forests sustainable and more resilient.
Evolutionary Ecotoxicology: The invisible dangers in the environment
Using our model organism, the midge (Chironomus riparius), we can demonstrate that environmental pollution is not only toxic but also acts as a powerful evolutionary driver. It forces rapid genetic adaptation and can trigger cellular stress that directly affects genetic material. Our water bodies and soils are often exposed to complex mixtures of new pollutants. We are investigating the effects of microplastics, tyre wear (urban sediments), heavy metals such as cadmium, and artificial night-time lighting (ALAN) on living organisms.
Mutation rates: The fundamental driving force of evolution
To understand just how flexibly species can respond, we investigate the pace of evolution. We measure the spontaneous mutation and recombination rates of DNA and analyse how these are altered by environmental factors such as temperature, pollutants or the rate of development. This basic research helps us to decipher how the genetic diversity arises from which natural selection can draw in a fluctuating environment. Social insects: the genetics of behaviour, ageing and parasitism Another key area of focus, shaped by the work of Barbara Feldmeyer, is dedicated to the fascinating societies of ants (such as those of the genus Temnothorax). We investigate how social structures, complex division of labour and extreme differences in life expectancy (queens versus workers) are controlled at the genetic and molecular levels. A particularly exciting area is social parasitism: we are unravelling the evolutionary arms race between parasitic ants and their unwilling hosts. We also examine how these social insects respond to temperature changes by rapidly adapting their gene activity, and how their vital chemical communication system (sense of smell) has been shaped by evolution.
Social insects: the genetics of behaviour, ageing and parasitism
Another key area of research, focuses on the fascinating societies of ants (such as those of the genus Temnothorax). We investigate how social structures, complex division of labour and extreme differences in life expectancy (queens vs. workers) are controlled at the genetic and molecular levels. A particularly exciting area is social parasitism: we are unravelling the evolutionary arms race between parasitic ants and their unwitting hosts. We are also investigating how these social insects respond to temperature changes by rapidly adapting their gene activity, and how their vital chemical communication system (sense of smell) has been shaped by evolution.
Biodiversity and evidence-based species conservation
The recording and conservation of biological diversity form the foundation of our work. We are creating high-quality reference genomes for a wide variety of species – from invasive mosquitoes and land snails to the critically endangered European wildcat. In the case of the latter, we are using historical and current genomic data to understand the impact of human activity and hybridisation processes (interbreeding with domestic cats). Such genomic time series provide the necessary evidence for targeted and locally adapted conservation measures.
Our mission
By deciphering the genetic basis of adaptation processes, we aim to make nature’s responses to global change predictable. Our research provides important insights for assessing the viability of populations and developing scientifically sound strategies for future nature conservation.
Working Group
Molecular Ecology

Further information
Hickler Thomas, Pfenninger Markus, Langan Liam, Feldmeyer Barbara, Fussi Barbara, Hoffmann Janik, Hetzer Jessica, Šeho Muhidin, Mellert Karl-Heinz (2025): Phenotypic drought stress prediction of European beech (Fagus sylvatica) by genomic prediction and remote sensing. Frontiers in Ecology and Evolution, doi.org/10.3389/fevo.2025.170427
Pfenninger Markus, Langan Liam, Feldmeyer Barbara, Eberhardt Linda, Reuss Friederike, Hoffmann Janik, Fussi Barbara, Seho Muhidin, Mellert Karl-Heinz, Hickler Thomas (2025): Predicting forest tree leaf phenology under climate change using satellite monitoring and population-based genomic trait association. Global Change Biology, 31(9), e70484, doi.org/10.1111/gcb.70484
Rigano Lorenzo, Schmitz Markus, Hollert Henner, Pfenninger Markus (2026): Beyond acute toxicity: evolutionary response by rapid polygenic adaptation to a complex environmental stressor in Chironomus riparius. Environmental Toxicology and Chemistry 45(4), 1006–1017, doi.org/10.1093/etojnl/vgag010
Rigano Lorenzo, Schmitz Markus, Linnemann Volker, Krauss Martin, Hollert Henner, Pfenninger Markus (2025): Exposure to complex mixtures of urban sediments containing Tyre and Road Wear Particles (TRWPs) increases the germ-line mutation rate in Chironomus riparius. Aquatic Toxicology 281, 107292, doi.org/10.1016/j.aquatox.2025.107292
Pfenninger Markus, Nieto-Blazquez Maria Esther, Bulut Burak (2026): Divergent thermal reaction norms of the spontaneous mutation rate among populations of Chironomus riparius. Molecular Ecology 35(15), e70503, doi.org/10.1111/mec.70503
Bulut Burak, Pfenninger Markus (2026): Developmental speed and chronological time exert opposing effects on the spontaneous mutation rate in Chironomus riparius. Evolution Letters 10(3), 283–293, doi.org/10.1093/evlett/qrag010
Macit Maide Nesibe, Collin Erwann, Nieto-Blazquez Maria Esther, Kever Marion, Litto M., Jaitner E., et al. (2025): Genomic Signatures of Selection Across Climate Gradients and a Geographic Mosaic of Coevolution in an Ant Social Parasite–Host System. Molecular Biology and Evolution 42(12), msaf293, doi.org/10.1093/molbev/msaf293
Darras Hugo, Yu Chuanxin, Kever Marion, Stoldt Marah, Feldmeyer Barbara, Foitzik Susanne (2026): Sequential origin of an alternative colony founding strategy driven by two supergenes in Temnothorax ants. Molecular Biology and Evolution 43(5), msag115, doi.org/10.1093/molbev/msag115
Reuss Friederike, Schell Tilman, Isawa Haruhiko, Kasai Shinji, Klimpel Sven, Müller Ruth, Pfenninger Markus, Kochmann Judith (2025): Annotated genome of Aedes japonicus japonicus using a hybrid-assembly approach. Frontiers in Genetics 16, 1667262, doi.org/10.3389/fgene.2025.1667262
Eberhardt Linda, Binde Doria Halina, Bulut Burak, Feldmeyer Barbara, Pfenninger Markus (2025): Transcriptomics predicts artificial light at night’s (ALAN) negative fitness effects and altered gene expression patterns in the midge Chironomus riparius (Diptera: Chironomidae). Environmental Pollution 369, 125827, doi.org/10.1016/j.envpol.2025.125827
Team
Head of Department

Team




Alumni working groups
Cosima Caliendo (Germany)
Burak Bulut (Turkey)
Lorenzo Rigano (Italy)
Friederike Reuss (Germany)
Maria Riaz (Pakistan)
Quentin Foucault (France)
Tilman Schell (Germany)
Mathilde Cordellier (France)
Juliane Hartke (Germany)
Hanno Schmidt (Germany)
Imran Khaliq (Pakistan)
Maide Macit (Germany)
Hannes Lerp (Germany)
Pedro Romero (Peru)
Ruth Jesse (Germany)
Aline Dépraz (Switzerland)
Ann-Marie Waldvogel (Germany)
Dennis Schreiber (Germany)
Andreas Wieser (Germany)
Sabrina Nemec (Germany)
Tim Haun (Germany)
Moritz Salinger (Germany)
Rebecca Bloch (Germany)
Maria Esther Nieto-Blázquez (Spain)
Halina Binde-Doria (Brazil)
Ann-Marie Waldvogel (Black Forest)
Katrin Koch (Frankfurt)
Luis Chueca (Spain)
Axel Magdeburg (Germany)
Eugenia Zarza (Mexico)
Simit Patel (England)
Elisabeth Funke (Germany)
Maria Esther Nieto-Blázquez (Spain)
Halina Binde-Doria (Brazil)
Ann-Marie Waldvogel (Black Forest)
Katrin Koch (Frankfurt)
Luis Chueca (Spain)
Axel Magdeburg (Germany)
Eugenia Zarza (Mexico)
Simit Patel (England)
Elisabeth Funke (Germany)